Bioinformatics services, organized by omics discipline
18 services and more than 240 distinct analyses, from single-cell and spatial transcriptomics to proteomics, phenomics and target discovery. Each one is delivered by a bioinformatician and cell biologist duo team, from $79/hour.
In short
OmicsQuest provides on-demand bioinformatics analysis for single-cell RNA-seq, snATAC-seq, multiome, spatial transcriptomics (Visium HD, Xenium, CosMx, MERSCOPE), bulk RNA-seq, epigenomics, genomics, proteomics, protein-protein interactions, Cell Painting, live-cell imaging, and target and drug discovery. Projects start from raw or processed data and end with publication-quality figures, methods text and reproducible code.
Single-cell and epigenomics
Cell states, chromatin, multi-omics and immune repertoires, resolved one cell at a time.
- Single-cell RNA-seq analysisfrom $79/hscRNA-seq and snRNA-seq: QC, integration, annotation, pseudobulk DE, trajectories.
- snATAC-seq and scATAC-seq analysisfrom $79/hChromatin accessibility per cell type: peaks, motifs, footprints, enhancer-gene links.
- Multiome and CITE-seq analysisfrom $79/h10x Multiome, CITE-seq, TEA-seq, DOGMA-seq: joint embeddings and regulatory networks.
- TCR/BCR immune repertoire analysisfrom $79/hClonotypes, clonal expansion, diversity, SHM and lineage trees, linked to cell state.
- CRISPR screen and Perturb-seq analysisfrom $79/hPooled screens and single-cell perturbation screens: hits, effects, programs.
Spatial biology
Where cells are, who their neighbors are, and what the tissue is doing.
- Visium HD spatial analysisfrom $79/h2 µm bins to cells: segmentation, deconvolution, domains, niches, signaling.
- Xenium in situ analysisfrom $79/hRe-segmentation, transcript QC, annotation, neighborhoods and niches.
- Spatial omics (CosMx, MERSCOPE, GeoMx, CODEX)from $79/hCosMx, MERSCOPE, GeoMx, Stereo-seq, CODEX, IMC: one analysis framework.
Bulk sequencing and genomics
Transcriptomes, epigenomes, genomes and microbiomes, analyzed with design-aware statistics.
- Bulk RNA-seq analysisfrom $79/hDE, batch handling, pathways, isoforms, splicing, deconvolution, time courses.
- ChIP-seq, CUT&RUN and ATAC-seqfrom $79/hPeak calling, differential binding, motifs, super-enhancers, integration.
- WGS, WES and variant analysisfrom $79/hGermline and somatic variants, CNV, SV, GWAS, long reads.
- Metagenomics and microbiomefrom $79/h16S/ITS, shotgun, MAGs, functional profiles, compositional statistics.
Proteomics and interactions
Proteins, modifications and the complexes they form.
Imaging and phenomics
Morphology and behavior measured from images and time-lapse microscopy.
Target and drug discovery
Evidence-weighted decisions for discovery programs.
Need a pipeline instead of a one-off analysis? See pipeline build and monthly maintenance.
How a project runs
The same five steps for every discipline, with a capped estimate before any billable work.
Scoping call
Thirty minutes, free. We learn the biology, the design and the deadline.
Capped estimate
A written plan with hours, deliverables and a cap. No surprise invoices.
Secure transfer and QC
Encrypted transfer, then a QC report and a go/no-go call within days.
Analysis with check-ins
Weekly calls with your duo team and interim figures you can steer.
Figures, methods, code
Publication-quality figures, methods text and reproducible code. Revisions are unlimited.
Tell us about your data.
Send a few lines about your experiment. A bioinformatician and a biologist will review it and reply with questions or a capped estimate. Analysis starts at $79/hour, and figure customization is unlimited.
- Free 30-minute scoping call
- Capped estimate before any billable work
- You own all data, code, figures and IP
Prefer email? contact@omicsquest.com